diff options
| author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2024-09-04 02:30:42 +0200 |
|---|---|---|
| committer | Andreas Enge <andreas@enge.fr> | 2024-09-21 09:24:23 +0200 |
| commit | 6c137dcf84f2fbb4c1acc9d0b2eff3fe0a072407 (patch) | |
| tree | 355aa5b99a81eeac899981c2908ac260f8385d3b | |
| parent | 2c54c2db410ebdda8cd71716315e4ea4d31befbd (diff) | |
| download | guix-patches-6c137dcf84f2fbb4c1acc9d0b2eff3fe0a072407.tar guix-patches-6c137dcf84f2fbb4c1acc9d0b2eff3fe0a072407.tar.gz | |
gnu: Add r-dtwclust.
* gnu/packages/cran.scm (r-dtwclust): New variable.
Change-Id: I411d25b5df8f9bf923e60602901105a612c42fe9
Signed-off-by: Andreas Enge <andreas@enge.fr>
| -rw-r--r-- | gnu/packages/cran.scm | 49 |
1 files changed, 49 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 13b92bb6f1..d8e07c6ed6 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -10972,6 +10972,55 @@ for sequence alignment, masking of sequence alignments, and estimation of phylogenies and ancestral character states.") (license license:gpl3))) +(define-public r-dtwclust + (package + (name "r-dtwclust") + (version "6.0.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "dtwclust" version)) + (sha256 + (base32 "0by01x4qpf1pin5l61wmm600bmsnlnns9knwb0qmjlj72pmwfkqh")))) + (properties `((upstream-name . "dtwclust"))) + (build-system r-build-system) + (propagated-inputs + (list r-clue + r-cluster + r-dplyr + r-dtw + r-flexclust + r-foreach + r-ggplot2 + r-ggrepel + r-matrix + r-proxy + r-rcpp + r-rcpparmadillo + r-rcppparallel + r-rcppthread + r-reshape2 + r-rlang + r-rspectra + r-shiny + r-shinyjs)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/asardaes/dtwclust") + (synopsis + "Clustering time series with dynamic time warping distance optimization") + (description + "This package implements time series clustering along with optimized +techniques related to the dynamic time warping distance and its corresponding +lower bounds. The implementations of partitional, hierarchical, fuzzy, k-Shape +and TADPole clustering are available. Functionality can be easily extended with +custom distance measures and centroid definitions. Implementations of @acronym{ +DTW, dynamic time warping} barycenter averaging, a distance based on global +alignment kernels, and the soft-DTW distance and centroid routines are also +provided. All included distance functions have custom loops optimized for the +calculation of cross-distance matrices, including parallelization support. +Several cluster validity indices are included.") + (license license:gpl3))) + (define-public r-dtw (package (name "r-dtw") |